The relevance of this study is determined by the fact that the duration and depth of technological gaps during the ongoing transition of technological paradigms, manifested in the discrepancy between old production relations and the level of development of new productive forces, can be significantly reduced through effective company management, which determined the choice of research topic. 
The aim of this paper is to study the methodology for designing management systems for agro-industrial complex organizations to solve their optimization problems in the context of ongoing market transformations. The scientific novelty of the obtained results lies in the generalization 
of methodological approaches to the design of organizational management systems based on the system-target, functional-technological, normative-structural, and organizational modeling approaches, and the identification of development trends in the context of ongoing market transformations, as applied to agro-industrial enterprises. The practical significance of the obtained results lies in their potential for use in developing a methodology for designing organizational management systems AIC during the transition from the fifth to the sixth technological paradigm.